I went back to working on the incidences this afternoon. The tail is done and with the retention bolts, I was able to adjust it and keep the stabs at 0 degrees pretty easily so they should be within 0.05 degrees of each other. I rechecked the stab incidence using the 1/4" bit like it was the anti-rotation dowel.
To help hold the wing in place and make the measurements, I took a piece of 1/2" balsa and cut a slot in it similar to the wing. I then clamp this to the fuse to hold the position. You really have to clamp down to keep it from moving. I had the clamp sitting on plywood in the fuse and you will crush the balsa a little with the tool, but it's OK.
After I drilled the first hole through the fuse, I found out a made a mistake. It turns out that when I put in the anti-rotation dowels, I put them in the wrong spots. I don't remember if I went off the plans but I know I didn't compare it to the fuse. So a lesson learned the hard way.
I was close on the front anti-rotation dowels but not close enough. So I opened a 1" hole with a forstner bit and had to remove part of the original anti-rotation dowel by drilling around the edges and then using a drywall bit in my dremel. I then went to the hardware store and bought a 1" dowel and cut it to lengths of each of the holes. I am gluing this in with poly glue and I will fill in any of the top gaps with epoxy and milled fiberglass.
I'm hoping this in an OK fix. The holes ended up slightly bigger than 1" and the new dowel is going through ply root. If I need to, I can dremel around the edge of the new anti-rotation dowel and fill that in with epoxy and milled fiberglass too.
Any advice is greatly appreciated.